%global packname multtest %global Rversion 3.0.0 Name: R-%{packname} Version: 2.20.0 Release: 4%{dist} Summary: Multiple hypothesis testing library from Bioconductor Summary(fr): Bibliothe que R de test multi-hypothèses Group: Applications/Productivity License: LGPLv2+ URL: http://www.bioconductor.org/packages/release/bioc/html/multtest.html Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n) Requires: R-core >= %{Rversion} R-Biobase BuildRequires: R-devel >= %{Rversion} tex(latex) R-Biobase %description Non-parametric bootstrap and permutation resampling-based multiple testing procedures for controlling the family-wise error rate (FWER), generalized family-wise error rate (gFWER), tail probability of the proportion of false positives (TPPFP), and false discovery rate (FDR). Single-step and step-wise methods are implemented. Tests based on a variety of t- and F-statistics (including t-statistics based on regression parameters from linear and survival models) are included. Results are reported in terms of adjusted p-values, confindence regions and test statistic cutoffs. The procedures are directly applicable to identifying differentially expressed genes in DNA microarray experiments. This Library is a part of the Bioconductor (bioconductor.org) proejct. %prep %setup -c -q -n %{packname} %build %install %{__rm} -rf %{buildroot} chmod -x %{packname}/src/*.c chmod -x %{packname}/DESCRIPTION mkdir -p %{buildroot}%{_libdir}/R/library R CMD INSTALL %{packname} -l %{buildroot}%{_libdir}/R/library # Clean up in advance of check test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) %{__rm} -rf %{buildroot}%{_libdir}/R/library/R.css chmod -x %{buildroot}%{_libdir}/R/library/%{packname}/otherDocs/*Rnw %check # Leads to a FTBFS # TODO: package the needed dependency to fix this #%{_bindir}/R CMD check %{packname} %clean %{__rm} -rf %{buildroot} %files %defattr(-, root, root, -) %dir %{_libdir}/R/library/%{packname} %doc %{_libdir}/R/library/%{packname}/DESCRIPTION %doc %{_libdir}/R/library/%{packname}/html %doc %{_libdir}/R/library/%{packname}/CITATION %{_libdir}/R/library/%{packname}/INDEX %{_libdir}/R/library/%{packname}/Meta/ %{_libdir}/R/library/%{packname}/R/ %{_libdir}/R/library/%{packname}/help/ %{_libdir}/R/library/%{packname}/libs/ %{_libdir}/R/library/%{packname}/NAMESPACE %{_libdir}/R/library/%{packname}/data %{_libdir}/R/library/%{packname}/otherDocs %changelog * Wed Feb 03 2016 Fedora Release Engineering - 2.20.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild * Tue Jun 16 2015 Fedora Release Engineering - 2.20.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild * Fri Aug 15 2014 Fedora Release Engineering - 2.20.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild * Wed Jul 02 2014 pingou 2.20.0-1 - Update to version 2.20.0 * Fri Jun 06 2014 Fedora Release Engineering - 2.18.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild * Mon Jan 27 2014 pingou 2.18.0-1 - Update to version 2.18.0 * Fri Aug 02 2013 Fedora Release Engineering - 2.16.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild * Sun Apr 07 2013 pingou 2.16.0-1 - Update to version 2.16.0 * Wed Feb 13 2013 Fedora Release Engineering - 2.14.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild * Tue Nov 27 2012 pingou 2.14.0-1 - Update to version 2.14.0 * Wed Jul 18 2012 Fedora Release Engineering - 2.12.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild * Thu Apr 26 2012 pingou 2.12.0-1 - Update to version 2.12.0 * Thu Jan 12 2012 Fedora Release Engineering - 2.10.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild * Wed Nov 9 2011 Tom Callaway 2.10.0-2 - rebuild for R 2.14.0 * Thu Nov 03 2011 pingou 2.10.0-1 - Update to version 2.10.0 * Wed Jun 22 2011 pingou 2.8.0-1 - Update to version 2.8.0 * Thu Feb 10 2011 pingou 2.6.0-3 - Remove the check section to test build * Mon Feb 07 2011 Fedora Release Engineering - 2.6.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild * Sat Jan 29 2011 pingou 2.6.0-1 - Update to version 2.6.0 * Tue May 11 2010 pingou 2.4.0-1 - Update to version 2.4.0 - Fix url to a more stable form - Fix R on R-core - Remove R on post/postun * Sat Nov 21 2009 pingou 2.2.0-1 - Update to 2.2.0 - Remove %%post and %%postun - Adapt %%files to R-2.10.0 - Fix BR tex(latex) * Fri Jul 24 2009 Fedora Release Engineering - 2.0.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild * Tue Apr 28 2009 pingou 2.0.0-1 - Update to Bioconductor 2.4 and R-2.9.0 - Use global instead of define * Mon Feb 23 2009 Fedora Release Engineering - 1.22.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild * Mon Oct 27 2008 pingou 1.22.0-1 - New version 1.22.0 for R >= 2.8.0 * Tue Jun 25 2008 pingou 1.20.0-3 - change the url * Tue May 27 2008 pingou 1.20.0-2 - Rebuild * Mon May 26 2008 pingou 1.20.0-1 - Update to version 1.20.0 * Tue Feb 19 2008 Fedora Release Engineering - 1.18.0-4 - Autorebuild for GCC 4.3 * Mon Jan 07 2008 Pingou 1.18.0-3 - Change on the BR and the description * Mon Jan 07 2008 Pingou 1.18.0-2 - Correct error on the URL * Tue Dec 04 2007 Pingou 1.18.0-1 - Update to bioconductor 2.1 * Wed Aug 29 2007 Pingou 1.16.1-1 - Update to 1.16.1 * Wed Aug 29 2007 Pingou 1.14.0-6 - Change the license tag * Fri Jul 13 2007 Pingou 1.14.0-5 - Change in the R and BR section to fit the guidelines * Tue Jul 10 2007 Pingou 1.14.0-4 - Change in post and postun to fit the packaging guidelines - Change in the prep section to fir the guidelines * Mon Jun 24 2007 Pingou 1.14.0-3 - Change de %%doc to avoid redundancy *Wed May 23 2007 Pingou 1.14.0-2 - Add the %%check section *Thu May 17 2007 Pingou 1.14.0-1 - Submitting to Fedora Extras *Wed Apr 29 2007 Pingou 1.14.0-0.1 -Build of the rpm