diff --git a/.cvsignore b/.cvsignore
index 0db7ae2..e35f4fe 100644
--- a/.cvsignore
+++ b/.cvsignore
@@ -20,3 +20,5 @@ eclipse-cdt-fetched-src-libhover-1_0_0.tar.gz
 eclipse-cdt-fetched-src-autotools-20081106.tar.gz
 eclipse-cdt-fetched-src-libhover-20081106.tar.gz
 eclipse-cdt-fetched-src-CDT_5_0_1.tar.bz2
+eclipse-cdt-fetched-src-autotools-R1_0_2.tar.gz
+eclipse-cdt-fetched-src-libhover-R0_1_1.tar.gz
diff --git a/eclipse-cdt.spec b/eclipse-cdt.spec
index ee06807..2b104ed 100644
--- a/eclipse-cdt.spec
+++ b/eclipse-cdt.spec
@@ -20,7 +20,7 @@ Epoch: 1
 Summary:        Eclipse C/C++ Development Tools (CDT) plugin
 Name:           eclipse-cdt
 Version:        %{majmin}.%{micro}
-Release:        1%{?dist}
+Release:        2%{?dist}
 License:        EPL and CPL
 Group:          Development/Tools
 URL:            http://www.eclipse.org/cdt
@@ -34,9 +34,9 @@ Requires:       eclipse-platform
 Source0: %{name}-fetched-src-CDT_5_0_1.tar.bz2
 Source4: fetch-cdt.sh
 
-Source1: http://sources.redhat.com/eclipse/autotools/eclipse-cdt-fetched-src-autotools-20081106.tar.gz
+Source1: http://sources.redhat.com/eclipse/autotools/eclipse-cdt-fetched-src-autotools-R1_0_2.tar.gz
 
-Source2: http://sources.redhat.com/eclipse/autotools/eclipse-cdt-fetched-src-libhover-20081106.tar.gz
+Source2: http://sources.redhat.com/eclipse/autotools/eclipse-cdt-fetched-src-libhover-R0_1_1.tar.gz
 
 ## The following tarball was generated thusly:
 ##
@@ -97,10 +97,6 @@ Patch15: %{name}-managedConfigurations.patch
 # the .cproject file.  This patch prevents the problem.
 Patch16: %{name}-managedConfigurations-fix.patch
 
-# Patch to autotools project detector code to not assume that ManagedProject
-# exists if project has Managed Nature.
-Patch17: %{name}-bug472731.patch
-
 BuildRequires: eclipse-pde
 BuildRequires: eclipse-mylyn >= 3.0
 %if %{gcj_support}
@@ -231,7 +227,6 @@ popd
 mkdir autotools
 pushd autotools
 tar -xzf %{SOURCE1}
-%patch17
 popd
 
 ## Libhover stuff
@@ -575,6 +570,10 @@ fi
 %endif
 
 %changelog
+* Fri Jan 16 2009 Jeff Johnston <jjohnstn@redhat.com> 5.0.1-2
+- Rebase libhover to 0.1.1 and autotools to 1.0.2.
+- Remove patch for 472731 which is already part of rebased autotools sources.
+
 * Fri Nov 28 2008 Jeff Johnston <jjohnstn@redhat.com> 5.0.1-1
 - Rebase to CDT 5.0.1.
 - Fix bug in autotools project type detection.
diff --git a/sources b/sources
index f5217e6..60fa62f 100644
--- a/sources
+++ b/sources
@@ -1,5 +1,5 @@
 5c470fb0777d27541edbfa31443d91f7  eclipse-cdt-cppunit-20061102.tar.gz
 2d4ae0a2131ba1efc896d981072cc091  eclipse-cdt-target_filter.gif.gz
-7bdfc7cfe88e694903225a858d3442c3  eclipse-cdt-fetched-src-autotools-20081106.tar.gz
-621bd568fed245c8368819692a066be9  eclipse-cdt-fetched-src-libhover-20081106.tar.gz
 f0db116442be6f461611739308535175  eclipse-cdt-fetched-src-CDT_5_0_1.tar.bz2
+80967f045be67d65396ce424ef093719  eclipse-cdt-fetched-src-autotools-R1_0_2.tar.gz
+23c3498e551936980269c83a0051d6b1  eclipse-cdt-fetched-src-libhover-R0_1_1.tar.gz