Adapt to Flatpak-from-RPM build
(see <https://docs.fedoraproject.org/en-US/flatpak/>). For one, various paths
need to be configured explicitly, as LO's configure would fall back to hardcoded
/usr paths instead of the /app paths needed here. For another, it is unclear to
me why those three __pycache__ files are not generated, but just not asking to
include them should be harmless.