From 0eb813ae65940efb45d48a4ac5238252d6b43c58 Mon Sep 17 00:00:00 2001
From: alexlan <alexlan@fedoraproject.org>
Date: Dec 01 2008 13:57:10 +0000
Subject: - Update to latest upstream (1.49) uses numpy and new API for psycopg2

- [Build]Requires python-numeric -> numpy
- [Build]Requires python-psycopg -> python-psycopg2
- Remove interactive question hack, no longer needed

---

diff --git a/.cvsignore b/.cvsignore
index b4cfaa7..674539c 100644
--- a/.cvsignore
+++ b/.cvsignore
@@ -1 +1 @@
-biopython-1.48.tar.gz
+biopython-1.49.tar.gz
diff --git a/python-biopython.spec b/python-biopython.spec
index 2eddb9f..71f7567 100644
--- a/python-biopython.spec
+++ b/python-biopython.spec
@@ -2,8 +2,8 @@
 %{!?python_sitearch: %define python_sitearch %(%{__python} -c "from distutils.sysconfig import get_python_lib; print get_python_lib(1)")}
 
 Name:             python-biopython
-Version:          1.48
-Release:          3%{?dist}
+Version:          1.49
+Release:          1%{?dist}
 Summary:          Python tools for computational molecular biology
 Source0:          http://biopython.org/DIST/biopython-%{version}.tar.gz
 License:          MIT
@@ -13,14 +13,14 @@ BuildRoot:        %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
 BuildRequires:    python-devel
 BuildRequires:    python-reportlab
 BuildRequires:    mx
-BuildRequires:    python-numeric
+BuildRequires:    numpy
 BuildRequires:    MySQL-python
-#BuildRequires:    python-psycopg
+BuildRequires:    python-psycopg2
 Requires:         python-reportlab
 Requires:         mx
-Requires:         python-numeric
+Requires:         numpy
 Requires:         MySQL-python
-#Requires:         python-psycopg
+Requires:         python-psycopg2
 Requires:         wise2
 
 %description
@@ -40,17 +40,12 @@ find Bio -type f -exec chmod -x {} 2>/dev/null ';'
 # remove she-bang lines in .py files to keep rpmlint happy
 find Bio -type f -name "*.py" -exec sed -i '/^#![ ]*\/usr\/bin\/.*$/ d' {} 2>/dev/null ';'
 
-# answer interactive question "yes" to build Bio.KDTree
 %build
-env CFLAGS="$RPM_OPT_FLAGS" %{__python} setup.py build <<EOF
-y
-EOF
+env CFLAGS="$RPM_OPT_FLAGS" %{__python} setup.py build
 
 %install
 rm -rf $RPM_BUILD_ROOT
-%{__python} setup.py install -O1 --skip-build --root=$RPM_BUILD_ROOT --install-data=%{_datadir}/python-biopython  <<EOF
-y
-EOF
+%{__python} setup.py install -O1 --skip-build --root=$RPM_BUILD_ROOT --install-data=%{_datadir}/python-biopython
 
 ## disable tests for the moment
 %check
@@ -74,6 +69,12 @@ rm -rf $RPM_BUILD_ROOT
 %{python_sitearch}/BioSQL/*
 
 %changelog
+* Mon Dec  1 2008 Alex Lancaster <alexlan[AT]fedoraproject org> - 1.49-1
+- Update to latest upstream (1.49) uses numpy and new API for psycopg2
+- [Build]Requires python-numeric -> numpy 
+- [Build]Requires python-psycopg -> python-psycopg2
+- Remove interactive question hack, no longer needed
+
 * Sun Nov 30 2008 Alex Lancaster <alexlan[AT]fedoraproject org> - 1.48-3
 - Temporarily disable python-psycopg dependency until it is rebuilt
   for Python 2.6
diff --git a/sources b/sources
index 6cf82e5..360a1d7 100644
--- a/sources
+++ b/sources
@@ -1 +1 @@
-b049e3af8128bea68e4e86b55c6d0996  biopython-1.48.tar.gz
+d233d4944f0c17d5927ca32c5a30d5b3  biopython-1.49.tar.gz