From 4f78a9d65bca9f09da9d1650664f44c645002ff0 Mon Sep 17 00:00:00 2001
From: alexlan <alexlan@fedoraproject.org>
Date: Nov 12 2007 08:49:52 +0000
Subject: - Drop patch to setup.py, applied upstream

Sun Oct 28 2007 Alex Lancaster <alexl@users.sourceforge.net> 1.44-1
- Update to latest upstream (1.44).

---

diff --git a/.cvsignore b/.cvsignore
index d73c5fe..69e3f4a 100644
--- a/.cvsignore
+++ b/.cvsignore
@@ -1 +1 @@
-biopython-1.43.tar.gz
+biopython-1.44.tar.gz
diff --git a/biopython-setup_test.patch b/biopython-setup_test.patch
deleted file mode 100644
index 04f0489..0000000
--- a/biopython-setup_test.patch
+++ /dev/null
@@ -1,65 +0,0 @@
-Index: setup.py
-===================================================================
-RCS file: /home/repository/biopython/biopython/setup.py,v
-retrieving revision 1.116
-diff -u -p -r1.116 setup.py
---- setup.py	17 Mar 2007 19:21:04 -0000	1.116
-+++ setup.py	11 Apr 2007 03:37:48 -0000
-@@ -238,11 +238,18 @@ class test_biopython(Command):
-     
-     """
-     description = "Automatically run the test suite for Biopython."
--    user_options = []  # distutils complains if this is not here.
--    def initialize_options(self):  # distutils wants this
--        pass
--    def finalize_options(self):    # this too
-+
-+    user_options = [
-+        # provide the option to run tests in no-gui mode
-+        ('no-gui', None, "Do not run in GUI mode")
-+    ]
-+
-+    def initialize_options(self):
-+        self.no_gui = None
-+
-+    def finalize_options(self):
-         pass
-+
-     def run(self):
-         this_dir = os.getcwd()
- 
-@@ -250,7 +257,10 @@ class test_biopython(Command):
-         os.chdir("Tests")
-         sys.path.insert(0, '')
-         import run_tests
--        run_tests.main([])
-+        if self.no_gui:
-+            run_tests.main(['--no-gui'])
-+        else:
-+            run_tests.main([])
- 
-         # change back to the current directory
-         os.chdir(this_dir)
-Index: Tests/run_tests.py
-===================================================================
-RCS file: /home/repository/biopython/biopython/Tests/run_tests.py,v
-retrieving revision 1.8
-diff -u -p -r1.8 run_tests.py
---- Tests/run_tests.py	9 Mar 2007 23:36:43 -0000	1.8
-+++ Tests/run_tests.py	11 Apr 2007 03:37:48 -0000
-@@ -56,7 +56,7 @@ def main(argv):
- 
-     # get the command line options
-     try:
--        opts, args = getopt.getopt(argv[1:], 'g',
-+        opts, args = getopt.getopt(argv, 'g',
- 				   ["generate", "no-gui", "help"])
-     except getopt.error, msg:
-         print msg
-@@ -316,5 +316,5 @@ def convert_string_newlines(line):
-     return line
-         
- if __name__ == "__main__":
--    sys.exit(main(sys.argv))
-+    sys.exit(main(sys.argv[1:]))
- 
diff --git a/python-biopython.spec b/python-biopython.spec
index 935383f..cd6dbfa 100644
--- a/python-biopython.spec
+++ b/python-biopython.spec
@@ -2,11 +2,10 @@
 %{!?python_sitearch: %define python_sitearch %(%{__python} -c "from distutils.sysconfig import get_python_lib; print get_python_lib(1)")}
 
 Name:             python-biopython
-Version:          1.43
-Release:          5%{?dist}
+Version:          1.44
+Release:          2%{?dist}
 Summary:          Python tools for computational molecular biology
 Source0:          http://biopython.org/DIST/biopython-%{version}.tar.gz
-Patch0:           biopython-setup_test.patch
 License:          MIT
 Url:              http://www.biopython.org/
 Group:            Development/Libraries
@@ -30,7 +29,6 @@ biology.
 
 %prep
 %setup -q -n biopython-%{version}
-%patch0 -p0
 
 # remove all execute bits from documentation and fix line endings
 find Scripts -type f -exec chmod -x {} 2>/dev/null ';'
@@ -73,6 +71,12 @@ rm -rf $RPM_BUILD_ROOT
 %{python_sitearch}/BioSQL/*
 
 %changelog
+* Sun Oct 28 2007 Alex Lancaster <alexl@users.sourceforge.net> 1.44-2
+- Drop patch to setup.py, applied upstream
+
+* Sun Oct 28 2007 Alex Lancaster <alexl@users.sourceforge.net> 1.44-1
+- Update to latest upstream (1.44).
+
 * Mon Aug 27 2007 Alex Lancaster <alexl@users.sourceforge.net> 1.43-5
 - Used "MIT" as short license name as the "Biopython License
   Agreement" is the same as the CMU MIT variant.
diff --git a/sources b/sources
index d378292..9b0c241 100644
--- a/sources
+++ b/sources
@@ -1 +1 @@
-3c275b321bb1db7d8bda764913aaedcd  biopython-1.43.tar.gz
+762c7a358af9dc58b712b8b4bb99d0c2  biopython-1.44.tar.gz